Publications

Alexandre J. Poulain and D.K. Newman (2009) Rhodobacter capsulatus Catalyzes Light-Dependent Fe(II) Oxidation under Anaerobic Conditions as a Potential Detoxification Mechanism, App. Environ. Microbiol., 75(21): 6639-6646.

A.L Sessions, D.M. Doughty, P.V. Welander, R.E. Summons and D.K. Newman (2009) The continuing puzzle of the great oxidation event, Current Biology, 19(14):R567-R574.

P.V. Welander, R.C. Hunter, L. Zhang, A.L. Sessions, R.E. Summons and D.K. Newman (2009) Hopanoids play a role in membrane integrity and pH homeostasis in Rhodopseudomonas palustris TIE-1, J. Bacteriol., 191(19):6145-6156. PMCID: PMC2747905.

D.M. Doughty, R.C. Hunter, R.E. Summons and D.K. Newman (2009) 2-Methylhopanoids are maximally produced in akinetes of Nostoc punctiforme: geobiological implications, Geobiology, 7(5): 524-532. DOI: 10.1111/j.1472-4669.2009.00217.x.

A.K. Boal, J.C. Genereux, P.A. Sontz, J.A. Gralnick, D.K. Newman and J.K. Barton (2009) Redox signaling between DNA repair proteins for efficient lesion detection, Proc. Nat. Acad. Sci., 106(36): 15237-15242. PMCID: PMC2741234.

L.R. Croal, Y. Jiao, A. Kappler, D.K. Newman (2009) Phototrophic Fe(II) oxidation in an atmosphere of H2: implications for Archean banded iron formations, Geobiology, 7:21-24. PMCID: PMC2763526.

H. Ehrlich and D.K. Newman (2008) Geomicrobiology 5th edition, CRC Press, New York, NY.

L.E.P. Dietrich, T.K. Teal, A. Price-Whelan, D.K. Newman (2008) Redox-Active Antibiotics Control Gene Expression and Community Behavior in Divergent Bacteria, Science, 321:1203-1206. PMCID: PMC2745639.

D.K. Newman (2008) From iron oxides to infections, Geobiology, 6(3): 196-200.

A.A. Gorodetsky*, L.E.P. Dietrich*, P.E. Lee, D.K. Newman and J.K. Barton (2008) DNA-binding shifts the redox potential of the transcription factor SoxR, PNAS, 105:3684-3689. PMCID: PMC2268809.

Y. Wang and D.K. Newman (2008) Redox reactions of phenazine antibiotics with ferric (hydr)oxides and molecular oxygen, Env. Sci. Technol., 42(7):2380-2386.

D. Malasarn, J.R. Keeffe, D.K. Newman (2008) Characterization of the arsenate respiratory reductase from Shewanella sp. str. ANA-3, J. Bacteriol., 190(1): 135-142.

N. Caiazza, D.P. Lies and D.K. Newman (2007) Phototrophic Fe(II) Oxidation Promotes Organic Carbon Acquisition by Rhodobacter capsulatus SB1003, App. Environ. Microbiol., 73(19): 6150-6158. PMCID: PMC2074999.

S.E. Rashby, A.L. Sessions, R.E. Summons, and D.K. Newman (2007) Biosynthesis of 2-methylbacteriohopanepolyols by an anoxygenic phototroph, PNAS, 104(38): 15099-15104. PMCID: PMC1986619.

A. Price-Whelan, L. Dietrich and D.K. Newman (2007) Pyocyanin alters redox homeostasis and carbon flux through central metabolic pathways in Pseudomonas aeruginosa PA14,  J. Bacteriol., 189(17): 6372-6381. PMCID: PMC1951912.

J.A. Gralnick and D.K Newman (2007) Extracellular respiration, Mol. Microbiol., 65(1):1-11.

Y. Jiao and D.K. Newman (2007) The pio operon is essential for phototrophic Fe(II) oxidation by Rhodopseudomonas palustris str. TIE-1, J. Bacteriol., 189(5): 1765-1773.

L.R. Croal, Y. Jiao and D.K. Newman (2007) The fox operon from Rhodobacter sp. SW2 promotes phototrophic Fe(II) oxidation in Rhodobacter capsulatus SB1003,  J. Bacteriol., 189(5): 1774-1782. PMCID: PMC1855712.

T. Bosak, S.E. Greene and D.K. Newman (2007) A likely role for anoxygenic photosynthetic microbes in the formation of ancient stromatolites, Geobiology, 5(2): 119-126.

T.K. Teal, D.P. Lies, B.J. Wold and D.K. Newman (2006) Spatiometabolic stratification of Shewanella oneidensis biofilms, App. Environ. Microbiol., 72(11):7324-7330. PMCID: PMC1636161.

K. Campbell, D. Malasarn, D.K. Newman and J.G. Hering (2006) Simultaneous microbial reduction of iron(III) and arsenic(V) in suspensions of hydrous ferric oxide, Environ. Sci. Technol., 40(19); 5950-5955.

L.E.P. Dietrich, A. Price-Whelan, A. Petersen, M. Whiteley and D.K. Newman (2006) The phenazine pyocyanin is a terminal signaling factor in the quorum sensing network of Pseudomonas aeruginosa, Mol. Microbiol., 61(5): 1308-1321.

L.E.P. Dietrich, M. Tice and D.K. Newman (2006) The co-evolution of life and earth, Current Biology, 16:R395-R400.

J.A. Gralnick, H. Vali, D. Lies and D.K. Newman (2006) Extracellular respiration of dimethyl sulfoxide by Shewanella oneidensis strain MR-1, PNAS, 103(12):4669-4674. PMCID: PMC1450229.

A. Price-Whelan, L. Dietrich and D.K. Newman (2006) Rethinking "secondary" metabolism: physiological roles for phenazine antibiotics, Nature Chemical Biology, 2:71-78.

T. Salmassi, J.J. Walker, D.K. Newman, J.R. Leadbetter, N.R. Pace, and J.G. Hering (2006) Community and cultivation analysis of arsenite oxidizing biofilms at Hot Creek, Environ. Microbiol., 8(1):50-59.

A. Komeili, Z. Li, D.K. Newman and G.J. Jensen (2006) Magnetosomes are cell membrane invaginations organized by the actin-Like protein MamK, Science, 311:242-245.

A.K. Lee, M. Buehler, and D.K. Newman (2006) Influence of a dual-species biofilm on the corrosion of mild steel, Corrosion Science, 48(1):165-178.

A. Kappler, B. Schink and D.K. Newman (2005) Fe(III)-mineral formation and cell encrustation by the nitrate-dependent Fe(II)-oxidizer strain BoFeN1, Geobiology, 3:235–245.

K.O. Konhauser, D.K. Newman and A. Kappler (2005) The potential significance of microbial Fe(III) reduction during deposition of Precambrian banded iron formations, Geobiology, 3:167-177.

D.K. Newman and J.A. Gralnick (2005) "What genetics offers geobiology", In: Molecular Geomicrobiology, Eds. J.F. Banfield and K.H. Nealson, Mineralogical Society of America, Washington, D.C., Reviews in Mineralogy & Geochemistry, 59:9-26.

C.W. Saltikov, R.A. Wildman and D.K. Newman (2005) Expression dynamics of arsenic respiration and detoxification in Shewanella species strain ANA-3, J. Bacteriology , 187(21): 7390-7396.

A. Kappler, C. Pasquero, K. Konhauser and D.K. Newman (2005) Deposition of Banded Iron Formations by Phototrophic Fe(II)-Oxidizing Bacteria, Geology, 33(11): 865-868.

Y. Jiao, A. Kappler, L.R. Croal and D.K. Newman (2005) Isolation and characterization of a genetically-tractable photoautotrophic Fe(II)-oxidizing bacterium, Rhodopseudomonas palustris strain TIE-1, App. Environ. Microbiol., 71(8): 4487-4496. PMCID: PMC1183355.

J.A. Gralnick, C.T. Brown and D.K. Newman (2005) Anaerobic respiration by an atypical Arc system in Shewanella oneidensis , Molecular Microbiology, 56(7): 1347-1357.

D.P. Lies*, M.E. Hernandez*, A. Kappler, R.E. Mielke, J.A. Gralnick, and D.K. Newman (2005) Shewanella oneidensis MR-1 uses overlapping pathways for iron reduction at a distance and by direct contact under conditions relevant for biofilms, Appl. Environ. Microbiol., 71(8): 4414-4426. PMCID: PMC1183279.

T. Bosak and D.K. Newman (2005) Microbial kinetic controls of calcite morphology in supersaturated solutions, Journal of Sedimentary Research, 75(2): 190-199.

D. Malasarn, C.W. Saltikov, K.M. Campell, J.M. Santini, J.G. Hering and D.K. Newman (2004) arrA is a reliable marker for As(V)-respiration, Science, 306:455.

T. Bosak, V. Souza-Egipsy, and D.K. Newman (2004) A laboratory model of abiotic peloid formation, Geobiology, 2:189-198.

L.R. Croal, J.A. Gralnick, D. Malasarn and D.K. Newman (2004) The Genetics of Geochemistry, Ann. Rev. Genetics, 38:175-202.

T. Bosak, V. Souza-Egipsy, F.A. Corsetti and D.K. Newman (2004) Micrometer-scale porosity as a biosignature in carbonate crusts, Geology, 32(9):781-784.

C.M. Johnson, B.L. Beard, E.E. Roden, D.K. Newman and K.H. Nealson (2004) Isotopic constraints on biogeochemical cycling of Fe, In Geochemistry of Non-Traditional Stable Isotopes (Ed. C.M. Johnson, B.L Beard & F. Albarede), Reviews in Mineralogy & Geochemistry, vol. 55, pp. 359-408.

A. Komeili, H. Vali, T.J. Beveridge and D.K. Newman (2004) Magnetosome vesicles are present prior to magnetite formation and MamA is required for their activation, PNAS, 101(11):3839-3844.

M.E. Hernandez, A. Kappler and D.K. Newman (2004) Phenazines and other redox active antibiotics promote microbial mineral reduction, Appl. Environ. Microbiol., 70(2):921-928.

A. Kappler and D.K. Newman (2004) Formation of Fe(III)-Minerals by Fe(II)-oxidizing Photoautotrophic Bacteria, Geochimica et Cosmochimica Acta, 68(6):1217-1226.

L.R. Croal, C.M. Johnson, B.L. Beard and D.K. Newman (2004) Iron Isotope Fractionation by Fe(II)-oxidizing Photoautotrophic Bacteria, Geochimica et Cosmochimica Acta, 68(6):1227-1242.

M. Buehler, G. Kuhlman, N. Myung, D. Keymeulen, S. Kounaves, D. Newman and D. Lies (2003) Planar Array REDOX Cells and pH Sensors for ISS Water Quality and Microbe Detection, International Conference On Environmental Systems, Doc. No. 2003-01-2533, pp. 1-8.

C. W. Saltikov and DK. Newman (2003) Genetic identification of a respiratory arsenate reductase, PNAS, 100:10983-10988.

T. Bosak and D.K. Newman (2003) Microbial nucleation of calcium carbonate in the Precambrian, Geology, 31:577-580.

C. W. Saltikov, A. Cifuentes, K.Venkateswaran, and D.K. Newman (2003) The ars detoxification system is advantageous, but not required, for As(V) respiration by the genetically tractable Shewanella species, strain ANA-3, Appl. Environ. Microbiol., 69:2800-2809.

A.K. Lee and D.K. Newman (2003) Microbial iron respiration: impacts on corrosion processes, Appl. Microbiol. and Biotechnol., 62:134-139.

D.K. Newman and J.F. Banfield (2002) Geomicrobiology: How molecular-scale interactions underpin biogeochemical systems, Science, 296:1071-1077.

M. Dubiel, S. Hsu, C.C. Chien, F. Manseld and D.K. Newman (2002) Microbial iron respiration can protect steel from corrosion, AEM, 68:1440-1445.

J. B. Shyu, D.P. Lies and D.K. Newman (2002) Protective role of tolC in the efflux of the electron shuttle, anthraquinone-2,6-disulphonate (AQDS) , J. Bacteriol., 184:1806-1810.

T.M. Salmassi, K. Venkateswaren, M. Satomi, K.H. Nealson, D.K. Newman and J.G. Hering. (2002) Oxidation of arsenite by Agrobacterium albertimagni, AOL15, sp. nov., isolated from Hot Creek, California, Geomicrobiol., 19:53-66.

R.S. Oremland, D.K. Newman, B.W. Kail and J.F. Stolz.(2002) "Bacterial respiration of arsenate and its significance in the environment" in Environmental Chemistry of Arsenic (ed. W.T. Frankenberger Jr.), Marcel Dekker: New York.

D.K. Newman (2001) How Bacteria Respire Minerals, Science 292:1312-1313.

M.E. Hernandez and D.K. Newman (2001) Extracellular Electron Transfer, Cellular and Molecular Life Sciences, 58:1562-1571.

D.K. Newman and R. Kolter. (2000) A role for excreted quinones in extracellular electron transfer. Nature 405:94-97.

D.K. Newman (2000) Arsenic. Encyclopedia of Microbiology 2nd ed (ed. J. Lederberg) Academic Press.

G.A. O'Toole, L.A. Pratt, P.I. Watnick, D.K. Newman, V.B.Weaver, & R. Kolter. (1999) Genetic approaches to the study of biofilms, p. 91-109. In R. J. Doyle (ed.), Methods in Enzymology, vol. 310, 91-109. Academic Press, San Diego, CA.

D.K. Newman, D. Ahmann & F.M.M. Morel. (1998) A brief review of microbial arsenate respiration. Geomicrobiol. 15:255-268.

D.K. Newman, E.K. Kennedy, J.D. Coates, D. Ahmann, D.J. Ellis, D.R. Lovley & F.M.M. Morel. (1997) Dissimilatory arsenate and sulfate reduction in Desulfotomaculum auripigmentum, Arch Microbiol 168:380-388.

D.K. Newman, T.J. Beveridge & F.M.M Morel. (1997) Precipitation of arsenic trisulfide by Desulfotomaculum auripigmentum, Appl. Environ Microbiol. 63(5):2022-2028.

 

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